Evolution with recombination as Gibbs sampling
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Poulton, J., Altenberg, L., and Watkins, C.
Theoretical Population Biology, online 2023.
2023
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[1.613]
The long and winding road to understanding organismal construction: Reply to comments on “From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics”
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Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
Physics of Life Reviews 42: 19-24.
2022
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From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics.
Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
Physics of Life Reviews, 42: 19-24.
arXiv preprint arXiv:2002.00363.
2021
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[61 Cites]
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[14.8]
Addendum Needed on COVID-19 Travel Study [Extended Preprint]
The Lancet Infectious Diseases Online First: September 15, 2021
2021
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[1 Cite]
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[25.0]
The Evolution of Imitation Without Cultural Transmission
Lee Altenberg, Susanne Still, and Christopher J. Watkins
https://arxiv.org/abs/2107.09761
2021
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From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics.
Manrubia, S., Cuesta, J.A., Aguirre, J., Ahnert, S.E., Altenberg, L., et al.
Physics of Life Reviews, online 21 May 2021.
arXiv preprint arXiv:2002.00363.
2021
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[35 Cites]
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[14.8]
Nonconcavity of the Spectral Radius in Levinger's Theorem
Lee Altenberg and Joel E. Cohen
Linear Algebra and Its Applications 606: 201Đ218.
2020
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[2 Cites]
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[0.973]
The evolution of frequency-dependent cultural transmission
Uri Liberman, Yoav Ram, Lee Altenberg, Marcus Feldman
Theoretical Population Biology
132: 69-81.
2020
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[5 Cites]
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[1.613]
Developmental Structuring of Phenotypic Variation: A Case Study with a Cellular Automata Model of Ontogeny
Wim Hordijk and Lee Altenberg
Evolution & Development 22 (1-2): 20-34..
Blog, “The Evolution of Robustness” online at The Extended Evolutionary Synthesis website.
2020
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[5 Cites]
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[1.82]
The Surprising Creativity of Digital Evolution: A Collection of Anecdotes from the Evolutionary Computation and Artificial Life Research Communities
Lehman, J., Clune, J., Misevic, D., Adami, C., Altenberg, L., et al..
Artificial Life 26(2): 274-306
2020
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An Extension of the Rayleigh Quotient to the Spectral Radius of Asymmetric Nonnegative Matrices.
arXiv preprint arXiv:1912.12771. Under review.
2019
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Some topics in theoretical population genetics: Editorial commentaries on a selection of Marc Feldman's TPB papers
Altenberg, L., N. Creanza, L. Fogarty, L. Hadany, et al.
Theoretical Population Biology 129: 4-8.
2019
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Thermodynamic Computing
Tom Conte, Erik DeBenedictis, Natesh Ganesh, Todd Hylton, John Paul Strachan, R. Stanley Williams, Alexander Alemi, Lee Altenberg, Gavin Crooks, James Crutchfield, et al.
A Computing Community Consortium (CCC) workshop report
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2019
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[27 Cites]
Physical Limitations of Work Extraction from Temporal Correlations
Elan Stopnitzky, Susanne Still, Thomas E. Ouldridge, and Lee Altenberg
Physical Review E 99(4): 042115;
and also in The Energetics of Computing in Life and Machines, David H. Wolpert, et al., eds. Santa Fe Institute Press.
2019
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[12 Cites]
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Generation of variation and a modified mean fitness principle: Necessity is the mother of genetic invention
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Yoav Ram, Lee Altenberg, Uri Liberman, and Marcus W. Feldman
Theoretical Population Biology 123: 1-8, https://doi.org/10.1016/j.tpb.2018.02.004
2018
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[9 Cites]
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Unified reduction principle for the evolution of mutation, migration, and recombination
Lee Altenberg, Uri Liberman, and Marcus W. Feldman
Proceedings of the National Academy of Sciences USA
, online March 6, 2017.
2017
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[47 Cites]
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[9.661]
Probing the axioms of evolutionary algorithm design: Commentary on “On the mapping of genotype to phenotype in evolutionary algorithms” by Peter A. Whigham, Grant Dick, and James Maclaurin
Genetic Programming and Evolvable Machines 18(3): 363-367
2017
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[4 Cites]
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[1.514]
Genetic Information, Mutation Rates, and the Lore of the Error Threshold
Proceedings of the 9th International Conference on Bioinformatics and Computational Biology (BICOB 2017).
2017
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Evolutionary Computation
Elsevier
Encyclopedia of Evolutionary Biology (2):40-47.
2016
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Norm Statement Considered Harmful: Comment on “Evolution of Unconditional Dispersal in Periodic Environments”
Journal of Biological Dynamics 10 (1): 342-346.
2016
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Fundamental Properties of the Evolution of Mutational Robustness
arXiv preprint arXiv:1508.07866
2015
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Statistical Problems in a Paper on Variation In Cancer Risk Among Tissues, and New Discoveries
arXiv preprint arXiv:1006.3147
2015
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[7 Cites]
Evolvability and Robustness in Artificial Evolving Systems: Three Perturbations
Genetic Programming and Evolvable Machines 15(3): 275-280
2014
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[3 Cites]
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[1.514]
Mathematics Awaits: Commentary on “Genetic Programming and Emergence” by Wolfgang Banzhaf
Genetic Programming and Evolvable Machines 15(1): 87-89
2014
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[3 Cites]
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On the Ordering of Spectral Radius Product r(A) r(AD) Versus r(A2D) and Related Applications
SIAM Journal on Matrix Analysis and Applications 34(3): 978-998
2013
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[3 Cites]
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A Sharpened Condition for Strict Log-Convexity of the Spectral Radius via the Bipartite Graph
Linear Algebra and Its Applications 438: 3702-3718
2013
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[8 Cites]
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[0.973]
Implications of the Reduction Principle for Cosmological Natural Selection
arXiv preprint arXiv:1302.1293
2013
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[1 Cites]
Social Insight Rings True 125 Years On
Correspondence, Nature 490 (7421): 487
2012
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[36.28]
The Principle of Partial Control in Reaction-Diffusion Models for the Evolution of Dispersal
2012
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The Evolution of Dispersal in Random Environments and the Principle of Partial Control
Ecological Monographs 82(3): 297-333
2012
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[17 Cites]
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[8.759]
Resolvent Positive Linear Operators Exhibit the Reduction Phenomenon
Proceedings of the National Academy of Sciences USA 109 (10): 3705-3710
2012
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[61 Cites]
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[9.661]
An Evolutionary Reduction Principle for Mutation Rates at Multiple Loci
Bulletin of Mathematical Biology 73: 1227-1270
2011
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[19 Cites]
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[1.263]
Proof of the Feldman-Karlin Conjecture on the Maximum Number of Equilibria in an Evolutionary System
Theoretical Population Biology 77: 263-269
2010
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[11 Cites]
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[1.613]
Karlin Theory On Growth and Mixing Extended to Linear Differential Equations
arXiv preprint arXiv:1006.3147
2010
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[6 Cites]
The Evolutionary Reduction Principle for Linear Variation in Genetic Transmission
Bulletin of Mathematical Biology 71 (5): 1264-1284
2009
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